Hopkins' Lab Publications

Journal Articles

Submitted / In Preparation

  • Zaw Myo Win, Yan Gao, Zuelei Liu, Gavin Tan, Xinyue Wang, Yu Chi Liu, Huifen Lin, Lam TC, Cheong AMY,ÌýHopkins WS,* Diagnosing Diabetic Retinopathy: A Machine Learning Approach to CIL LC-MS Analysis of Tear Sample Metabolites, 2024, Analytical Chimica Acta, (Submitted)

Published

  • Steinstra C, Herbert L, Thomas P, Haack A, Guo J, Hopkins WS,* Graphormer-IR: Graph Transformers Predict Experimental IR Spectra Using Highly Specialized Attention, 2024, 64(12), 4613-4629
  • Lee A, McMahon TB,* Hopkins WS,* Fluorinated Propionic Acids Unmasked: Puzzling Fragmentation Phenomena of the Deprotonated Species, J. Phys. Chem. Letters, 2024, 15, 3029-3036
  • Steinstra C, Haack A, Lee A, Hopkins WS,* Ion core switching during photodissociation dynamics via the Rydberg states of XeAr, Chem. Phys., 2024, 112254
  • Abaeva M, Ieritano C, Hopkins WS, Schipper D* Unsymmetrical Imidazopyrimidine-based Bimetallic Ligand and Complexes, Inorg. Chem., 2024, 63(2), 1010-1019
  • Dezalay J, Ryan C, Ieritano C, Hopkins WS, Fernandes I, Cammidege A, Stockett M, Nobel J, Bull J* Protomers of the green and cyan fluorescent protein chromophores investigated using action spectroscopy, Phys. Chem. Chem. Phys., 2023, 2023, 25(30), 20405-20413
  • Ieritano C, Haack A, Hopkins WS,* MobCal-MPI 2.0: An Accurate and Parallelized Package for Calculating Field-Dependent Collision Cross Sections and Ion Mobilities, Analyst, 2023, 148, 3257-3273
  • Stienstra C, Ieritano C, Haack A, Hopkins WS,* Bridging the Gap between Differential Mobility, Log S, and Log P Using Machine Learning and SHAP Analysis, Anal. Chem., 2023, 95(27), 10309-10321
  • Ryan CRM, Haack A, Hopkins WS*, , ChemRxiv. Cambridge: Cambridge Open Engage; 2023 https://doi.org/10.26434/chemrxiv-2023-bn642
  • Dezalay J, Ryan CRM, Ieritano C, Hopkins WS, Fernandes I, Cammidege A, Stockett M, Nobel J, Bull J* Protomers of the green and cyan fluorescent protein chromophores investigated using action spectroscopy, Phys. Chem. Chem. Phys., 2023,Ìý25(30), 20405-20413
  • Ieritano C, Haack A, Hopkins WS,* , Analyst, 2023, 148, 3257-3273
  • Stienstra C, Ieritano C, Haack A, Hopkins WS,* , Anal. Chem., 2023, 95(27), 10309-10321
  • Ieritano C, Thomas P, Hopkins WS,* , Anal. Chem., 2023, 95(22), 8668-8678
  • Bissonnette JR, Ryan CRM, Ieritano C, Hopkins WS,* Haack A,* , J. Am. Soc. Mass Spectrom., 2023, 34(7), 1417-1427
  • Ieritano C, Haack A, Hopkins WS,* , J. Am. Soc. Mass Spectrom., 2023, 34(7), 1315-1329
  • Haack A, Schaefer C, Zimmermann S, Hopkins WS,* , J. Am. Soc. Mass Spectrom., 2023, 34(6), 1035-1046
  • Win Z-M, Cheong A, Hopkins WS,* , J. Chem. Inform. Model., 2023, 63, 7, 1906-1913 (Cover Article)
  • Steinstra C, Coughlan NJA, Haack A, Carr PJJ, Crouse J, Featherstone J, Hopkins WS,* , Can. J. Chem., 2023 doi.org/10.1139/cjc-2022-0283 (Invited following Laidler Award)
  • Haack A, Hopkins, WS,* , J. Am. Soc. Mass Spectrom. (2022)
  • Ieritano C, Hopkins WS,* , Phys. Chem. Chem. Phys. (2022)
  • Ashworth EK, Coughlan NJA, Hopkins WS, Bieske EJ, Bull JN,*, J. Phys. Chem. Lett. (2022)
  • Montgomery CA, Jameel I, Cuzzucoli F, Chidley T, Hopkins WS,* Murphy GK,* , Chem. Eur. J. (2022)
  • Ding X, Kumar, M, Zheng Z, Lee A, Hopkins WS, Attygalle AB*,Ìý,ÌýJ. Am. Soc. Mass Spectrom. (2022)
  • Mashmoushi N, Campbell JL, DiLorenzo R, Hopkins WS,* , Analyst, (2022)
  • Bowesman CA, Akbari H, Hopkins WS, Yurchenko S, Tennyson J,* , J Quant Spect. Rad. Trans., (2022)
  • Ieritano C, Le Blanc JCY, Schneider BB, Haack A, Bissonnette JR, Hopkins WS,* , Angewandte Chemie Int. Ed. (2022) [Frontispiece]
  • Haack A, Bissonnette J, Ieritano C, Hopkins WS,* , J. Am. Soc. Mass Spectrom, (2022)
  • Coughlan NJA, Stockett M, Kjaer C, Ashworth E, Bulman Page P, Meech S, Broensted Nielsen S, Blancafort L, Hopkins WS,* Bull J*, , J. Chem. Phys., (2021)
  • Mashmoushi N, Juhasz DR, Coughlan NJA, Schneider BB, Le Blanc JCY, Guna M, Zeigler B, Campbell JL, Hopkins WS,* , J. Phys. Chem. A, (2021) [cover article]
  • Villaneuva Heldmaier F, Coughlan NJA, Haack A, Huard R, Guna M, Schneider BB, Le Blanc JCY, Nooijen M, Campbell JL, Hopkins WS,* , Phys. Chem. Chem. Phys., (2021)
  • Coughlan NJA, Fu W, Guna M, Schneider BB, Le Blanc JCY, Campbell JL, Hopkins WS,* , Phys. Chem. Chem. Phys., (2021)
  • Ieritano C, Campbell JL, Hopkins WS,* , Analyst, (2021)
  • Ieritano C, Lee A, Course J, Bowman Z, Mashmoushi N, Crossley PM, Friebe BJ, Campbell JL, Hopkins WS,* , Anal. Chem., (2021)
  • Ieritano C, Hopkins WS,* , (2021)
  • Ieritano C, Hopkins WS,* , Mat. Today Commun., (2021)
  • Ieritano C, Rickert D, Featherstone J, Honek J, Campbell JL, Le Blanc JCY, Schneider B, Hopkins WS,* , J. Am. Soc. Mass Spectrom., (2021) [Cover Article]
  • Snowdon MR, Wang S, Mashmoushi N, Hopkins WS, Schipper DJ* , New J. Chem., (2021)
  • Sinclair GS, Claridge RCM, Kukor AJ, Hopkins WS, Schipper DJ* , Chem. Sci., (2021)
  • Piccolo K, McNeil B, Crouse J, Lim SJ, Bickers SC, Hopkins WS, Dieckmann T* , Biochem Bioph Res Co, (2020)
  • Campbell JL,* Kalfe A, Bowman Z, Le Blanc JCY, Liu C, Hopkins WS,* , Analytical Science Advances, (2020)
  • Risticevic S, Souza-Silva EA, Gionfriddo E, Dell JR, Cochran J, Hopkins WS, Pawliszyn J,* , Scientific Reports, (2020)
  • Ieritano C., Featherstone J., Guna M., Campbell J. L., Hopkins W. S.,* , J. Am. Soc. Mass Spectrom., (2020)
  • Crouse J., Haack A., Benter T., Hopkins W. S.,* , J. Am. Soc. Mass Spectrom., (2020)
  • Coughlan N. J. A., Carr P. J. J., Walker S. C., Zhou C., Guna M., Campbell J .L., Hopkins W. S.,* , J. Am. Soc. Mass Spectrom., (2020)
  • Haack A., Crouse J., Schleuter F-J., Benter T., Hopkins W. S.,* , J. Am. Soc. Mass Spectrom., (2019)
  • Coughlan N. J. A., Liu C., Lecours M. J., Campbell J. L., Hopkins W. S.,* , J. Am. Soc. Mass Spectrom., 30(11), 2222-2227 (2019)
  • Ieritano C., Campbell J. L., Hopkins W. S.,* , Int. J. Mass Spectrom., (2019)
  • Cheng M., Rivas N., Lim S. J., Pichugin K., Petruk A. A., Klinkova A., Smith R., Hopkins W. S., Sciaini G.,* , J. Phys. Chem. Lett., (2019)
  • Chidley T., Jameel I., Rizwan S., Peixoto P. A., Pouysegu L., Quideau S.,* Hopkins W. S.,* Murphy G.,* , Angew. Chem. Int. Ed., (2019) [Cover Article]
  • Carr P. J. J., Warneke J., Featherstone J., Jenne C., Loire E., Hopkins W. S., , Mol. Phys., (2019) [Invited]
  • Hopkins W. S.,* Verzilov V., Sciaini G., Burgess I., Boland M., et al., , Can. J. Phys., (2019) [Cover Article]
  • Zhou C., Ieritano C., Hopkins W. S.,* , Front. Chem., (2019)
  • Ieritano C., Crouse J., Campbell J. L., Hopkins W. S.,* , Analyst, (2019)
  • Walker S. W. C., Anwar A., Psutka J. M., Crouse J., Liu C., Le Blanc J. C. Y., Montgomery J., Goetz G. H., Janiszewski J. S., Campbell J. L., Hopkins W. S.,* , Nat. Commun., (2018)
  • Hopkins W. S.,* , Comprehensive Analytical Chemistry, vol. 83 - Advances in Ion Mobility-Mass Spectrometry; Fundamentals, Instrumentation, and Applications, (2018)
  • De Vlught I. J. S., Lecours M. J., Carr P. J. J., Anwar A., Marta R. A., Fillion E., Steinmetz V., Hopkins W. S.,* , J. Phys. Chem. A, (2018)
  • Anwar, A., Psutka, J., Walker S. W. C., Dieckmann, T., Janiszewski, J. S., Campbell, J. L.,* Hopkins, W. S.,* , Int J. Mass Spectrom., (2018) [Invited]
  • Psutka J.M., Dion-Fortier A., Dieckmann T., Campbell J. L., Segura P. A., Hopkins W. S.,* , Anal. Chem., (2018)
  • Ieritano C., Featherstone J., Carr P. J. J., Marta R. A., Loire E., McMahon T. B., Hopkins W. S.,* , Phys. Chem. Chem. Phys., (2018)
  • Carr P. J. J., Lecours M. J., Burt M. J., Marta R., Steinmetz V., Fillion E., Hopkins W. S.,* , J. Phys. Chem. Lett., (2017)
  • Walker S. W. C., Mark A., Verbuyst B., Bogdanov V., Campbell J. L.,* Hopkins W. S.,* , J. Phys. Chem. A, (2017)
  • Fu W., Hopkins W. S.,* , J. Phys. Chem. A, (2017)
  • Liu, C., Leblanc J.C.Y., Schneider, B., Shields, J., Federico, J., Zhang, H., Stroh, J., Kauffman, G., Kung, D., Ieritano, C., Shepherdson, E., Verbuyst, M., Melo, L., Hasan, M., Naser, D., Janiszewski, J.J.,* Hopkins, W. S.,* Campbell, J.L.,* , ACS Cent. Sci., (2017) [Cover Article]
  • Lecours, M. J., Marchand, A., Hopkins, W. S., Gabelica, V.,* , Biochim. et Biophys. Acta: General Subjects, (2017) [Invited]
  • Lecours, M. J., Marta, R. A., Steinmetz, V., Keddie, N., O'Hagan, D,* Fillion, E., McMahon, T. B.,* Hopkins, W. S.,* , J. Phys. Chem. Letters, 8, 109-113 (2017)
  • Fu, W., Carr, P.J.J., Lecours, M.J., Burt, M., Marta, R.A.,Steinmetz, V., Fillion, E., McMahon, T. B., Hopkins, W. S.,* , Phys. Chem. Chem. Phys., DOI: (2017)
  • Sinclair, G.S., Tran, R., Tao, J., Hopkins, W. S.,* Murphy, G.K.,* , Eur. J. Org. Chem., 27, 4603-4606 (2016) [Cover Article]
  • Simidzija, P., Lecours, M.J., Marta, R.A., Steinmetz, V., McMahon, T. B., Fillion, E.,* Hopkins, W. S.,* , Inorg. Chem., 55, 9579-9585 (2016)
  • Ritter, S.K., , Chemical & Engineering News, 94(20), 8 (2016) [Research Highlight]
  • Fu, W., Xiong, J., Lecours, M.J.,ÌýCarr, P.J.J., Marta, R.A., Fillion, E., McMahon, T. B., Steinmetz, V., Hopkins, W. S.,* , J. Mol. Spectrosc., 330, 194-199 (2016)
  • Ziegler, B. E., Lecours, M. J., Steinmetz, V., Marta, R. A., Fillion, E., Hopkins, W. S., Keddie, N., O'Hagan, D.,* McMahon, T. B.,* , J. Am. Chem. Soc., 138(24), 7460-7463 (2016) [Cover Article]
  • Campbell, J. L.,* Yang, A. M.-C., Melo, L. R., Hopkins, W. S.,* , J. Am. Soc. Mass Spectrom., 27(7), 1277-1284 (2016)
  • Ieritano, C., Carr, P. J. J, Hasan, M., Burt, M., Marta, R. A., Steinmetz, V., Fillion, E., McMahon, T. B., Hopkins, W. S.* , Physical Chemistry Chemical Physics, 18,Ìý 4704 - 4710 (2016)
  • Liu, C., Le Blanc, J. C. Y., Shields, J., Janiszewski, J. S., Ieritano, C., Ye, G. F., Hawes, G. F., Hopkins, W. S.,* Campbell, J. L.,* , The Analyst, 140, 6897 – 6903 (2015) [Cover Article]
  • Hopkins, W. S.,* Carr, P. J. J., Huang, D., Bishop, K. P., Burt, M., McMahon, T. B., Steinmetz, V., Fillion, E., , The Journal of Physical Chemistry A, 119(31), 8469 – 8475 (2015) [Cover Article]
  • Hopkins, W. S.,* Molecular Physics, 113(21), 3159 – 3160 (2015) [Invited]
  • Hopkins, W. S.,* Molecular Physics, 113(21), 3151 – 3158 (2015) [Invited, Cover Article]
  • Hopkins, W. S.,* Marta, R. A., McMahon, T. B.,* , Physical Chemistry Chemical Physics, 17(43), 28548 – 28555 (2014) [Cover Article]
  • Burt, M., Wilson, K., Marta, R. A., Hasan, M., Hopkins, W. S., McMahon, T. B.,* , Physical Chemistry Chemical Physics, 16(44), 24223 – 24234 (2014)
  • Campbell, J. L., Zhu, M., Hopkins, W. S., , J. Am. Soc. Mass Spectrom., 25(9), 1583-1591 (2014)
  • Hopkins, W. S., Hasan, M., Burt, M., Marta, R. A., Fillion, E. F., McMahon, T. B., , J. Phys. Chem. A, 118, 3795 - 3803 (2014)
  • Lecours, M. J., Chow, W. C. T., Hopkins, W. S., , J. Phys. Chem. A, 118, 4278 - 4287 (2014) [Cover Article]
  • Hopkins, W. S., Marta, R. A., McMahon, T. B., , J. Phys. Chem. A, 117, 10714 - 10718 (2013)
  • Horiuchi, N., , Nature Photonics, 6, 80 (2012) [Research Highlight]
  • Hopkins, W. S., Mackenzie, S. R., , Mol. Phys., 110, 2465 - 2475 (2012)
  • Hermes, A. C., Hamilton, S. M., Hopkins, W. S., Harding, D. J., Kerpal, C., Meijer, G., Fielicke, A., Mackenzie, S. R., , J. Phys. Chem. Letters, 2, 3053 - 3055 (2011)
  • Forthomme, D., Linton, C., Read, A., Tokaryk, D. W., Adam, A. G., Downie, L. E., Granger, A. D., Hopkins, W. S., , J. Mol. Spectrosc., 270(2), 108 - 115 (2011)
  • Hopkins, W. S., Mackenzie, S. R., , J. Chem. Phys., 135, 081104-1 - 081104-3 (2011)[Communication]
  • Hopkins, W. S., Lipciuc, M.L., Gardiner, S. H., Vallance, C., , J. Chem. Phys., 135, 034308-1 - 034308-9 (2011)
  • Hamilton, S. M., Hopkins, W. S., Harding, D. J., Walsh, T. R., Grune, P., Haertelt, M., Fielicke, A., Meijer, G., Mackenzie, S. R., , J. Phys. Chem. A, 115, 2489 - 2497 (2011)
  • Hopkins, W. S., Woodham, A. P., Plowright, R. J., Wright, T.G., Mackenzie, S. R., , J. Chem. Phys. 134, 094311-1 - 094311-7 (2011)
  • Hopkins, W. S., Woodham, A. P., Tonge, N. M., Ellis, A. M., Mackenzie, S. R., , J. Phys. Chem. Letters, 2, 257-261 (2011)
  • Harding, D. J., Grune, P., Haertelt, M., Meijer, G., Fielicke, A., Hamilton, S. M., Hopkins, W. S., Mackenzie, S. R., Neville, S., Walsh, T. R., , J. Chem. Phys., 133,214304-1 - 214304-9 (2010)
  • Hopkins, W. S., Woodham, A. P., Plowright, R. J., Wright, T. G., Mackenzie, S. R., , J. Chem. Phys., 132, 214303-1 - 214303-9 (2010)
  • Harding, D. J., Walsh, T. R., Hamilton, S. M., Hopkins, W. S., Mackenzie, S. R., Grune, P., Haertelt, M., Meijer, G., Fielicke, A., , J. Chem. Phys., 132, 011101-1 - 011101-4 (2010) [Communication]
  • Hamilton, S. M., Hopkins, W. S., Harding, D. J., Walsh, T. R., Grune, P., Haertelt, M., Fielicke, A., Meijer, G., Mackenzie, S. R., , J. Am. Chem. Soc., 132, 1445-1449 (2010)[Communication]
  • Harding, D. J., Walsh, T. R., Hamilton, S. M., Hopkins, W. S., Mackenzie, S. R., Grune, P., Haertelt, M., Meiejer, G., Fielicke, A., , arXiv: 0909.5546 (2009)
  • Hopkins, W. S., Hamilton, S. M., MNaughter, P. D., Mackenzie, S. R., , Chem. Phys. Lett., 483, 10-15, (2009) [Editor's Choice]
  • Hopkins, W. S., Hmailton, S. M., Mackenzie, S. R., , J. Chem. Phys., 130, 144308-1 - 144308-8, (2009)
  • Loock, H.-P., Hopkins, W. S., Morris-Blair, C., Resendes, R., Saari, J., Trefiak, N., , Applied Optics, 48(14), 2735-2741 (2009)
  • Linton, C., Ross, A. J., Adam, A. G., Crozet, P., Downie, L. E., Granger, A. D., Hopkins, W. S., , J. Mol. Spectrosc., 250, 98 -105 (2008)
  • Hopkins, W. S., Loock, H.-P., Cronin, B., Nix, M. G. D., Devine, A. L., Dixon, R.N., Ashfold, M.N.R., Yin, H.-M., Rowling, S. J., Bull, A., Kable, S. H., , J. Phys. Chem. A., 112(39), 9283-9289 (2008)
  • Hopkins, W. S., Loock, H.-P., Cronin, B., Devine, A. L., Nix, M. G. D., Dixon, R. N., Ashfold, M. N. R., (2007) , J. Chem. Phys., 127: 064301-1 – 064301-11
  • Adam, A. G., Hopkins, W. S., Sha, W., Tokaryk, D. W. (2006) , TiCl and TiBr. J. Mol Spectrosc., 236, 42 – 51
  • Balfour, W. J., Li, R., Adam, A. G., Hopkins, W. S. (2005) , J. Mol. Spectrosc., 234, 211 – 215
  • Ram, R. S., Hopkins, W. S., Adam, A. G., Bernath, P.F. (2005) , J. Mol. Spectrosc., 232, 358 – 368
  • Tokaryk, D. W., Adam, A. G., Hopkins, W. S., (2005) , J. Mol. Spectrosc., 230, 54 – 61
  • Crozet, P., Ross, A. J., Linton, C., Adam, A. G., Hopkins, W. S., LeRoy, R. J. (2005) , J. Mol. Spectrosc., 229, 224 – 230
  • Adam, A. G., Hopkins, W. S., Tokaryk, D. W. (2004) , J. Mol. Spectrosc., 225, 1 – 7

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Books & Book Chapters

  • Hopkins WS, An Introduction to Spectroscopy and Quantum Structure, Cambridge Scholars ISBN: 1-4438-1787-2; ISBN13: 978-1-4438-1787-5
  • Hopkins WS, Chapter 4: Dynamic Clustering and Ion Microsolvation, In Comprehensive Analytical Chemistry Vol 83: Ion Mobility Spectrometry, Elsevier, Pg. 83 – 122 January 2019
  • Hopkins WS, An Introduction to Spectroscopy and Quantum Structure, TopHat, September 2017

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Technical Reports

  • Campbell JL, Hopkins WS, Predicting molecular properties using differential mobility spectrometry(Invention Disclosure 7 July 2017
  • Hopkins WS, Microsolvation studies of gas phase ions and development of next generation mass spectrometric techniques, AB Sciex Technical Report, AB Sciex, 2013
  • Hopkins WS, Hydrohalogenation and Degradation Studies of Butyl Rubber, Bayer Technical Report, Bayer Inc., 2000

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Patents

  • Predicting Molecular Collision Cross-Section using Differential Mobility Spectrometry, Campbell JL, Hopkins WS, August 15³Ù³óÌý2023, US 11,728,152 B2
  • Ion Mobility Spectrometer and Method of Analysing Ions,ÌýHopkins WS, Pawliszyn J, June 6th,2023. Canadian Patent No. 3,090,898
  • Machine Learning Drug Evaluation Using Liquid Chromatographic Testing, Zaw M-W, Cheong A, Hopkins WS, USPTO 17/864,393
  • Apparatus and Method for Parallel Flow Trapped Ion Mobility Spectrometry, Hopkins WS, Pawliszyn J, March 7th, 2023. U.S. Patent No. 11,598,748 B2
  • Ion Mobility Spectrometer and Method of Analysing Ions,ÌýHopkins WS, Pawliszyn J, March 15th, 2022. U.S. Patent No. 11,275,054 B2
  • Predicting Molecular Properties using Differential Mobility Spectrometry, Campbell JL, Hopkins WS, Provisional: November 22nd, 2017; international filing: November 11th, 2018; Full: June 6th 2019, WO/2019/106483
  • Optical Pickup for a Musical Instrument, Hopkins WS, Trefiak NR, Saari J, Resendes R,ÌýU.S. Patent No. 61-105624,ÌýFiled: October 15th, 2008. Canadian Patent Application No. 268287

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